[Chimera-users] Fwd: combine models

Francesco Pietra chiendarret at gmail.com
Sat Apr 10 10:37:52 PDT 2021

Of course I tried to open the corresponding mmCIF, but CHIMERA candidate
1.15 build 42258 linux64 answered that the cif file [line 3] appears in tag
name entry.id and it was not opened

---------- Forwarded message ---------
From: Francesco Pietra <chiendarret at gmail.com>
Date: Sat, Apr 10, 2021 at 6:45 PM
Subject: combine models
To: chimera <chimera-users at cgl.ucsf.edu>

(1) I am faced by the coordinates for a nucleics/protein assembly being
given in several bundle.pdb, while I need a sequential, continuous pdb file
that comprises all nucleotides and proteins, not made of models

(2) If I load all the bundles to chimera, I see all expected ligands around
the small molecule.

(3) With all models selected, copy/combine (adopting default first model as
reference and allowing renaming chains) generates a new model. The new
model laks some proteins that should lie near the ligand, as described at

I feel that I am missing something.

Thanks for advice
francesco pietra
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