[Chimera-users] issue with heme minimization

Elaine Meng meng at cgl.ucsf.edu
Mon Sep 14 09:07:29 PDT 2020

The heme.defattr file is a link from the URL you already found:

> https://www.cgl.ucsf.edu/pipermail/chimera-users/2019-July/015972.html

In the lower part of that page, the link to the defattr file is

URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20190715/ecb1dce6/attachment.obj>

...and you just need to click that and then save it as a plain text file.  You can rename that plain text file heme.defattr if you want.

I hope this helps,
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 12, 2020, at 9:53 AM, Rio Aquarius <rioxel at gmail.com> wrote:
> Hi,
> I have an issue with heme minimization, Fe atom leaves a heme plane. I saw at least one user had the same issue and got help to solve it (https://www.cgl.ucsf.edu/pipermail/chimera-users/2019-July/015972.html). I could try the protocol described there, but I don't have the heme.defattr file. I hope you can help me with it too. I have attached a pdb file with this issue.
> <CYP51_min300.pdb>

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