[Chimera-users] flipping model in chimera

[Tom Goddard]

Hi Dmitry,

  Here's some example Python code to flip atom z coordinates in our newer program ChimeraX.

	http://plato.cgl.ucsf.edu/trac/chimera/wiki/FlipZ

  Tom


> On Sep 3, 2020, at 2:45 AM, Dmitry Semchonok <semchonok at gmail.com> wrote:
> 
> Dear Elaine,
>  
> By ‘model’ I mean coordinate file that is build up by coot/phenix for fitting into the volume map.
> The ‘vop zflip’ works for the volume maps
>  
>  
> Any options how to flip the coordinate map?
>  
>  
> Thank you!
>  
> Sincerely,
> Dmitry
>  
> От: Elaine Meng <mailto:meng at cgl.ucsf.edu>
> Отправлено: 2 сентября 2020 г. в 19:07
> Кому: Dmitry Semchonok <mailto:semchonok at gmail.com>
> Копия: Chimera <mailto:chimera-users at cgl.ucsf.edu>
> Тема: Re: [Chimera-users] flipping model in chimera
>  
> Hi Dmitry,
> It depends what you mean by "model" but for maps in Chimera there is a "vop zflip" command for flipping about the Z axis only:
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/vop.html#zFlip <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/vop.html#zFlip>>
>  
> There is no option to do this for other types of models.
>  
> ChimeraX map flipping ("volume flip") can use other axes, not just Z:
> <http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#flip <http://rbvi.ucsf.edu/chimerax/docs/user/commands/volume.html#flip>>
>  
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.                       
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
>  
>  
>  
>  
> > On Sep 2, 2020, at 8:40 AM, Dmitry Semchonok <semchonok at gmail.com <mailto:semchonok at gmail.com>> wrote:
> > 
> > Dear colleagues,
> >  
> > How to flip the model in chimera?
> >  
> > Thank you!
> >  
> > Sincerely.
> > Dmitry
> >  
> >  
> > Отправлено из приложения "Почта" для Windows 10
> >  
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>  
>  
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