[Chimera-users] Broken links, system requirements

Greg Couch gregc at cgl.ucsf.edu
Wed Oct 21 11:44:21 PDT 2020


Your university might want the regular version of Chimera to remotely 
display data.  In that case, you should set up VirtualGL as well.  And a 
RDP solution, like x2go.  It doesn't perform as well as Chimera running 
locally on the desktop, but it might be sufficient.

     -- Greg

On 10/21/2020 11:21 AM, Calvin Dodge wrote:
>
> Greg,
>
> Thanks for your reply  _/I/_ don’t want to run Chimera in a cluster 
> environment, but the university I’m doing the install for does.  I’ll 
> install the headless version.
>
> Sincerely,
>
> Calvin Dodge
>
> */Calvin Dodge/*/
> Systems Analyst/
>
> /Office: 832-271-7148/
>
> /
> /Email : cdodge at x-iss.com <mailto:ellorente at x-iss.com>
>
> http://www.x-iss.com 
> <https://mail.x-iss.com/owa/redir.aspx?C=32dc65a1e7df4e4289ad76e23a15fcf0&URL=http%3a%2f%2fwww.x-iss.com%2f>
>
> <http://www.x-iss.com/>
>
> Smart Management and Analytics for Clusters
>
> *From: *Greg Couch <mailto:gregc at cgl.ucsf.edu>
> *Sent: *Wednesday, October 21, 2020 12:24 PM
> *To: *Calvin Dodge <mailto:cdodge at x-iss.com>; 
> chimera-users at cgl.ucsf.edu <mailto:chimera-users at cgl.ucsf.edu>
> *Subject: *Re: [Chimera-users] Broken links, system requirements
>
> (We're working on the web site issues.)
>
> So the real question is why do you want to run Chimera in a cluster 
> environment?
>
> Chimera is not designed to run in a cluster environment, it is 
> designed to run a user's desktop computer using 3D graphics.  Chimera 
> does not use CUDA.  That said, there is a headless version for Linux 
> that uses a software implementation of OpenGL to create images that 
> you could use in a cluster, so no graphics card is needed.
>
> ChimeraX, our successor to Chimera, can take advantage of CUDA in some 
> circumstances, but it is not required.  ChimeraX also only works 
> headless on Linux, with a software implementation of OpenGL.  The 
> headless operation is included in every Linux version.  So no graphics 
> card is needed there either.  We are investigating ways to take 
> advantage of the graphic card's performance when running headless, but 
> we're not there yet.
>
>     HTH,
>
>     Greg
>
> On 10/21/2020 9:24 AM, Calvin Dodge wrote:
>
>     Hello,
>
>     I have been trying to find out what the hardware requirements are
>     for Chimera.  For example, how can it be run in a cluster
>     environment with CUDA cards, but no Nvidia graphics cards?
>
>     My search for information has been hampered by an apparent failure
>     or reorganization of the main site -https://www.cgl.ucsf.edu/chimera/
>
>     Every internal link from that page (like to Downloads) is broken.
>
>     Will the broken links be fixed?  Is another page the preferred one
>     for Chimera? Do I need the OSMesa version to run without graphics
>     cards?
>
>     Thanks,
>
>     Calvin Dodge
>
>     */Calvin Dodge/*/
>     Systems Analyst/
>
>     /Office: 832-271-7148/
>
>     /
>     /Email : cdodge at x-iss.com <mailto:ellorente at x-iss.com>
>
>     http://www.x-iss.com
>     <https://mail.x-iss.com/owa/redir.aspx?C=32dc65a1e7df4e4289ad76e23a15fcf0&URL=http%3a%2f%2fwww.x-iss.com%2f>
>
>     <http://www.x-iss.com/>
>
>     Smart Management and Analytics for Clusters
>
>
>
>     _______________________________________________
>
>     Chimera-users mailing list:Chimera-users at cgl.ucsf.edu  <mailto:Chimera-users at cgl.ucsf.edu>
>
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