[Chimera-users] zone & segname

Elaine Meng meng at cgl.ucsf.edu
Sun Nov 15 09:43:43 PST 2020

Hi Francesco,
Please use menu: Help... Report a Bug and attach the file (or files) needed so that we can open this trajectory in Chimera and take a look at it directly.
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Nov 15, 2020, at 2:18 AM, Francesco Pietra <chiendarret at gmail.com> wrote:
> Afterwords, the only way I found to solve indirectly the problem was with command
> select @#/serialNumber=48727
> which pointed to residue 3687.W with segname WT2
> I hope there is a quicker way
> fp
> ---------- Forwarded message ---------
> From: Francesco Pietra <chiendarret at gmail.com>
> Date: Sun, Nov 15, 2020 at 11:03 AM
> Subject: zone & segname
> To: chimera <chimera-users at cgl.ucsf.edu>
> Hello
> Working with charmm36, therefore with the great aid of segname for my homotrimer, when commanding
> sel :27.M z<3
> I get also a water molecule, with O-atom Tip3 3687.W OH2
> Is there any way to extend the above command in order to have the segname associated with this water residue? This is because there are eight 3687.W residues with different segnames.
> I tried to solve indirectly the problem with
> sel :3687.W@/pdbSegment=WT#
> where # ranges from 1 to 8 (i.e., the same residue name for segname WT1 to WT8). Contrary to my expectations, it does not work
> The same with sel :3687@/pdbSegment=WT#
> Thanks for advice
> francesco pietra
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