[Chimera-users] Load AMBER trajectory from command line?
rodrigogalindo at gmail.com
Wed May 20 12:49:03 PDT 2020
Perfect! Thank you very much!
On Wed, May 20, 2020 at 1:45 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:
> Hi Rodrigo!
> Happily, I can say yes there is a way. You can put the information that would have been entered in the initial MD Movie dialog into a small text file called "metafile" and then open the metafile with a command, e.g. something like:
> open md:/Users/meng/Desktop/mymetafile
> There is some description of this below the formats table in the "MD Movie" input section:
> ... specifically
> See also "MD Movie metafile" in the general input formats table:
> I hope this helps,
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> > On May 20, 2020, at 12:34 PM, Rodrigo Galindo-Murillo <rodrigogalindo at gmail.com> wrote:
> > Hello!
> > I wonder if there is a way to load an AMBER topology/trajectory
> > directly from the command line without having to go to
> > tools->Md/ensemble-> MD movie, etc...
> > For example, in VMD you can use:
> > vmd -parm7 topology.parm7 -netcdf trajectory.nc
> > I am NOT implying VMD is better than Chimera :)
> > It will be just faster to be able to quickly load trajectories from
> > the command line to save some time.
> > Thanks!
> > Rodrigo.
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