[Chimera-users] problems in opening PDB file
sette at uniroma2.it
Tue Mar 24 08:34:03 PDT 2020
maybe you can have a look at your pdb file by using a text editor to
check if the pdb contains some unusual portion (like missing residues).
As far I know Chimera tries to reconstruct missing residues but
sometimes there could be something wrong.
Il 24/03/2020 10:05, Laura Rotilio ha scritto:
> I'm writing because I'm trying to open my pdb file but this error came
> out "Attempt to form loop bond".
> I tried to have a look at the _init_.py file in the line 1109 and I
> found this message:
> molList = pdbio.readPDBfile(file, errOut=errLog)
> I can't understand this message and I don't know how to eventually
> modify my pdb file in order to be able to open it.
> Thanks in advance for helping me,
> Laura Rotilio
> Laura Rotilio, Ph.D. Student
> *Structural Biology Lab., Prof. A. Mattevi*
> Dept. Biology and Biotechnology "L. Spallanzani"
> University of Pavia
> Via Ferrata 9, 27100 Pavia
> Tel. +39-0382-985525 <tel:%2B39-0382-985525>/985534
> Fax +39-0382-528496 <tel:%2B39-0382-528496>
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Dr.Marco Sette, Ph.D.
Department of Chemical Sciences and Technology
University of Rome, "Tor Vergata"
via della Ricerca Scientifica, 00133, Rome, Italy
e-mail: sette at uniroma2.it
e-mail: m77it at yahoo.it
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