[Chimera-users] Chimera Molecular Dynamics

Benjamin Strickland bstrickland at drew.edu
Sun Jun 28 21:49:42 PDT 2020


I have recently started playing around with the MD tool in chimera, however
I have noticed something odd.  I set up the simulation and begin running it
however, upon completion of the initial minimization I reach the "MMTK
updated coordinates" step and heating.nc files appear on the desktop.
However, after this point the application has a (not responding) and there
appears no be very little usage of the CPU.  I am unsure if something is
going wrong or I have to simply wait longer as I see no indication of any
pending process or status.  I am running Windows 10 and the CPU is a AMD
Threadripper 3960x.
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