[Chimera-users] Electrostatic Potential Calculations Using Coulomb's Law

Arth Patel patelarth2604 at gmail.com
Fri Jul 24 12:10:10 PDT 2020

Hello Everyone,

I have a .pqr file generated using the APBS website and I want to calculate
the electrostatic potential for each atom of the proteins using this. I did
this using the surface analysis --> Coulombic Surface on Chimera. As part
of my current research I am supposed to write a code on python for the same
but when I compare the results, I am getting different results. Can
someone please explain how to calculate the atom electrostatic potentials
from a .pqr file theoretically?

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