[Chimera-users] Chimera, Modeller, and socket modules

Eric Pettersen pett at cgl.ucsf.edu
Mon Aug 31 17:33:46 PDT 2020

Hi Casey,
	I guess the question is what Python interpreter is being used by Modeller.  To get more information, insert these lines before the "from modeller.parallel import *" line in LoopRefinement_3cpu.py:

import sys

	Let me know what the output is.


	Eric Pettersen
	UCSF Computer Graphics Lab

> On Aug 31, 2020, at 3:55 PM, Casey Becker <cbecker11 at mail.csuchico.edu> wrote:
> Hello,
> I'm attempting to do some loop refinements using Modeller in Chimera while making use of Modeller's parallel job feature to use multiple CPUs. When I run the scripts directly through python's IDLE interface, it works. However, when I attempt to run a custom script including parallel jobs directly through the Chimera interface, I receive an error stating that I'm missing a socket module. I've contacted the Modeller help email and they referred me to you after suggesting I replace the mod9.24.exe with python.exe in the "Modeller executable," but that didn't work. In fact, it froze my Chimera. I've attached copies of my scripts and the error I get. Any assistance appreciated. Thank you.
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