[Chimera-users] adding hydrogen to pdbqt

Elaine Meng meng at cgl.ucsf.edu
Tue Apr 28 07:18:10 PDT 2020

Sorry, there is no Chimera tool to do that.

Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Apr 27, 2020, at 10:37 PM, Marawan Hussien <marawanhussain at yahoo.com> wrote:
> I am trying to find an easy to use tool to add hydrogen atoms to molecules in pdbqt format to carbon atoms only as I do not want to change the tautomeric state of the molecules, I tried rdkit, obabel, chimera but every tool I tried will add hydrogen to the entire molecule not carbon atoms only? Any suggestion?

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