[Chimera-users] Imagine processing from gromacs

benjamintam benjamintam at um.edu.mo
Wed Apr 22 21:10:58 PDT 2020


Dear all,

I am a new user of Chimera, I have generate a .gro file from gromacs and put it into the chimera. However, the imagine has a lot of cross bonding due to the protein is crossing the PBC. Hence I would like to ask how to fix that so the imagine does not cross the pbc box.

Best regards,

Ben

Ph.D, M.Eng, FHEA

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