[Chimera-users] 2D diagram and CDK-Depiction.jar

[Conrad Huang]

Hi, David.

The CDK files were left behind when we upgraded our hardware.  They 
should be back in place again.  Can you please try again and see if it 
works?  Thanks.

Conrad

On 4/5/2020 7:00 PM, David Ricardo Figueroa Blanco wrote:
> Hi!
> 
> I am trying to generate 2d diagrams with Dockview  from autodock vina 
> outputs but I get this problem :
> 
> Web Service: cdkdepiction converts either SMILES strings or MOL2 files 
> into 2D structure diagrams in PNG format
> Opal service URL: 
> http://webservices.rbvi.ucsf.edu/opal2/services/CDKDepictionService
> Opal job URL: 
> http://webservices.rbvi.ucsf.edu/appCDKDepictionService1586137005272-807576004
> CDKDepictionService stderr
> -----
> Error: Unable to access jarfile /usr/local/cdk/CDK-Depiction.jar
> -----
> CDKDepictionService stdout
> -----
> [no output]
> -----
> Structure diagram generation failed; see Reply Log for more information
> 
> Any suggestion or needed program to install?
> 
> Thank you !
> 
> _______________________________________________
> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>