[Chimera-users] Electrostatic Potential
goddard at sonic.net
Mon Sep 16 11:03:08 PDT 2019
Instead of thinking about the coloring, it would be clearer to ask how much surface area has electrostatic potential value >= 5. Chimera does not have any code to compute that, although it is something we could add to ChimeraX.
> On Sep 11, 2019, at 7:27 PM, Fernando Villa <fer.vdl1928 at gmail.com> wrote:
> Dear all Chimera users
> In UCSF ChimeraX version 0.91 (2019-08-30)
> I opened a .pqr file (generated with pdb2pqr in Chimera 1.14) and then I opened a .dx file (generated with APBS in Chimera 1.14)
> Then I input the commands:
> >color electrostatic #1 map #2 palette -10,red:0,white:10,blue
> Is it possible to calculate the red and blue area in Å2 of the molecule?
> Best regards,
> Fernando Villa Díaz
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