[Chimera-users] Where is the radius.nc map file in the Semliki Forest virus?

[Elaine Meng]

Dear Yepin Sun,
That is a very old tutorial (2005) — now radial coloring does not require another map.  Instead you just use the by “radius” option in the Surface Color dialog, as described here:
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/surfcolor/surfcolor.html>

The Semliki Forest virus tutorial uses EMDB 1015, and in that case the “origin” to use in Surface Color dialog for coloring by radius is 0 0 0.  In other data it might be in a different location.

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 15, 2019, at 10:03 PM, sunyeping <sunyeping at aliyun.com> wrote:
> 
> Dear everyone,
> The  Semliki Forest virus tutorial (https://www.cgl.ucsf.edu/chimera/data/tutorials/semliki/semliki.html) mentioned a radius.nc which is used for visualization of the layer. However, the tutorial doesn't describe where the reader can download it. 
> Do you know where to get thid file?
> Thank you in advance.
> Yeping Sun