[Chimera-users] Command line equivalence for Render by Attribute radii

Sygusch Jurgen jurgen.sygusch at umontreal.ca
Thu Sep 12 13:09:43 PDT 2019


Hello,

    I cannot seem to find the command line equivalence for Render by Attribute radii. I am trying to display a tunnel where the atom B-factors represent the tunnel radius. I am able to display the tunnel as expected by using the GUI.

    In the GUI, when I do Tools --> Depiction --> Render by Attribute --> atoms --> My Model; then Render Attribute --> bfactor; Radii --> Atom Style --> Sphere, I get the expected result of the tunnel diameter varying according to Bfactor (tunnel radius).

    What is the command line equivalence for doing this? I cannot seem to find it.

    Thank you for looking into this.
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