[Chimera-users] Modeller from a Python script

Elaine Meng meng at cgl.ucsf.edu
Tue Sep 10 12:53:06 PDT 2019

Hi Samo,
I believe it would make more sense to script Modeller directly since you have a local installation.  Chimera doesn’t have commands for running Modeller.  If you just script Modeller, you have access to all its options, not just the few that happen to show up in the Chimera interface.

See the Modeller website and documentation there:

Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 10, 2019, at 9:36 AM, Samo Lešnik <samo.lesnik at gmail.com> wrote:
> Dear Madam/Sir,
> I would like to run the Modeller missing loop function implemented in Chimera by using a Python script, as I want to go through a number of protein structures.
> Is this possible? I do not find the appropriate commands in the comand list. I would use a local instalation of Modeller.
> Thank you for your help.
> Best regards,
> Samo

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