[Chimera-users] RR distance map, scale normalization

[Arvind SHARMA]

Thanks for your reply Elaine.

Have a nice weekend
Arvind.
________________________________
From: Elaine Meng <meng at cgl.ucsf.edu>
Sent: Friday, May 3, 2019 4:19:39 PM
To: Arvind SHARMA
Cc: Chimera User Help
Subject: Re: [Chimera-users] RR distance map, scale normalization

Hi Arvind,
Unfortunately not, it is a limitation of RR distance maps.  It is mentioned in the technical notes section at the bottom of the page, "Coloring is applied across the full value range.”

<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/rrdistmaps/rrdistmaps.html>

Sorry about that,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On May 3, 2019, at 12:11 AM, Arvind SHARMA <arvind.sharma at pasteur.fr> wrote:
>
> Hi,
>
> I am comparing four drug bound structures of homologous proteins to their unbound structures in chimera RR distance maps. These structures vary to different degree to unbound structures and I want to show that in four individual RR distance maps (each bound structure to unbound structure). The problem is that the scale varies each time and I was wondering if there is a way to normalize the scale? or set the color code so that, for e.g, for stdv of 10 its red in all cases and below 5 its always white.
>
> Thanks.
> Best wishes,
> Arvind.

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