[Chimera-users] Script to generate and fit structures

Ahmad Khalifa underoath006 at gmail.com
Wed Jun 12 10:08:30 PDT 2019

I meant fit into density, it's a microtubule map with lots of tubulin
monomers. I'm trying to build the entire structure into density from a
single monomer in an automated way.

On Wed, Jun 12, 2019, 12:44 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Ahmad,
> A command script is just a text file that has the same commands you would
> type in the command line.  So, you just have to figure out by trial and
> error (typing them into the command line individually) which commands you
> want to put in the file.
> See commands: combine, move, savepos, reset, maybe also tile
> I don’t know what you mean by “fit it into its new place,” but if you mean
> superimposing one structure on another, see commands matchmaker and match.
> List of all commands, click links to see details on each one:
> <http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/framecommand.html>
> General explanation of command files and links to examples:
> <
> http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/indexcommand.html#cmdfile
> >
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> > On Jun 12, 2019, at 5:15 AM, Ahmad Khalifa <underoath006 at gmail.com>
> wrote:
> >
> > I want to write a script that can copy combine my structure, translate
> it up, down, left or right a certain distance, fit it into its new place.
> >
> > Is it feasible, how can I do it?
> >
> > Regards.
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