[Chimera-users] Chimera question

maveyrau laurent.maveyraud at ipbs.fr
Wed Jun 5 23:25:07 PDT 2019


1f16.pdb is an NMR structure, hence the PDB file includes several copies of the same protein representing different conformations of the protein that satisfy the NMR constraints. So you have 1 structure that includes several « submodels ».. Likely Pymol will also import all submodels but only displays the first one.
You can select a given submodel: SELECT -> CHAIN -> A -> and you will sell #0.1 #0.2….
#0.1 means select submodes 1 from model 0. This also applies to the command line

hope this helps


Laurent Maveyraud
PICT, Plateforme Intégrée de Criblage de Toulouse
Université Paul Sabatier / CNRS / I.P.B.S. UMR 5089
Département Biologie Structurale et Biophysique
http://cribligand.ipbs.fr, http://www.ipbs.fr
205 route de Narbonne 31077 TOULOUSE Cedex FRANCE
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> Le 6 juin 2019 à 05:44, Mike de la Flor <mike at delaflor.com> a écrit :
> Hello Mr. Pettersen,
> I apologize for bothering you but I had a Chimera question that is best explained by the screenshot attached. For some reason Chimera is importing multiple copies of 1f16.pdb. PyMol does not do this, but I prefer to use Chimera. Do you have any suggestions as to how to fix this?
> Thank you in advance.
> Mike de la Flor, CMI
> Board Certified Medical Illustrator
> PhD Candidate
> Biology and Biochemistry
> Natural Sciences and Mathematics
> University of Houston
> <screeshot.png>
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> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
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