[Chimera-users] How to color density maps using markers?

Elaine Meng meng at cgl.ucsf.edu
Thu Jan 17 14:05:35 PST 2019

Hi Ahmad,
There’s not really that many steps to it.  You just need to select the markers and then use the Color Zone tool.  There is a little more description here

...and in the Color Zone manual page:

As mentioned in that page, you can also do it with the “scolor” command “zone” option.

I hope this helps,
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jan 17, 2019, at 9:19 AM, Ahmad Khalifa <underoath006 at gmail.com> wrote:
> I know I can use volume tracer to place markers in the density. There was a tutorial explaining the use of these markers to color certain areas of my density map, however I lost track of it. 
> Best regards. 

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