[Chimera-users] saving Mol2 files with $name or $number

prasad ssv prasad.ssva at gmail.com
Thu Feb 28 20:49:19 PST 2019

thank you for your approach towards my problem.its been solved.
i have individual mol2 files in single file.please check my combined file
is that file okay for docking by using dock6 suite.file is attched below
thanking you,

On Thu, Feb 28, 2019 at 10:43 PM Elaine Meng <meng at cgl.ucsf.edu> wrote:

> Hi Prasad,
> I don’t know what other words to use — it is exactly as the description
> says.  First decide if you want one file or multiple files.  If you want
> one file, choose whether you want all in one molecule or individual
> molecule sections,  then choose location and enter the filename.  (Most
> people want individual molecules, but we are giving you the choice.) If you
> want multiple files, choose location, but there is only one place to enter
> name (even though the result will have multiple names) so you have to enter
> something that literally includes “$name” or “$number”.
> Example:
> If you have two files that are models #1 and #2 in Chimera and you choose
> to save multiple files and enter file name:
> blahblah$number.mol2
> … then you will get two files, blahblah1.mol2 and blahblah2.mol2
> I hope this helps,
> Elaine
> -----
> Elaine C. Meng, Ph.D.
> UCSF Chimera(X) team
> Department of Pharmaceutical Chemistry
> University of California, San Francisco
> > On Feb 28, 2019, at 5:41 AM, prasad ssv <prasad.ssva at gmail.com> wrote:
> >
> > hi
> > good evening
> > i have sdf files,i converted all those sdf files into single mol2
> files..there is a option
> >       • a single file [individual @MOLECULE sections]
> >       • multiple files [file name must contain $name or $number]
> >       • a single file [combined @MOLECULE section]
> > may i know meaning of these option and i would like to know file name
> must contain $name or $number may i know how to write that.
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20190301/a7903a29/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: lig2_charged-single-file-individual.mol2
Type: application/octet-stream
Size: 18819 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20190301/a7903a29/attachment.obj>

More information about the Chimera-users mailing list