[Chimera-users] Question about AutoDock

Conrad Huang conrad at cgl.ucsf.edu
Wed Feb 13 15:29:00 PST 2019

That's very odd.  The Chimera tool is supposed to detect and download 
the data.  If it doesn't take too long, can you please try running it 
again?  When the request is sent, there should be a "status" URL 
displayed in the Reply Log.  You can use a browser to visit that URL to 
check on the calculation.  If you can send one of those URLs to me, I 
can try to do a little more investigation as to why Chimera is not 
behaving properly.  Thanks.


On 2/13/2019 11:53 AM, Cassidy Terrell wrote:
> Hello,
> I am using the AutoDock feature in UCSF Chimera and after clicking 
> "Apply" everything appears to work normally and then program says: 
> E/xecution complete - check outputs to verify successful execution/
> In the past a ViewDock window with the results would automatically 
> pop-up after the execution completed - however this is no longer 
> happening and I do not know how to access the output files. The program 
> did not write a /name.pdbqt /file - all other files are there though.
> Any suggestions for accessing the output file would be much appreciated!!
> -- 
> Cassidy R. Terrell, Ph.D.
> Assistant Professor, Biochemistry
> University of Minnesota, Rochester
> 111 South Broadway
> Rochester, MN 55904
> /Always believe something wonderful is about to happen/
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