[Chimera-users] pseudobond problem while writing mol2 format

Palani, Kirubakaran Kirubakaran.Palani at fccc.edu
Fri Dec 6 07:43:15 PST 2019

Hi All,

I have a PDB file and want to convert the PDB to MOL2 format. The PDB has missing residues which is not a problem but when I write to MOL2 format it assigns the pseudobond and I really no need of it. I tried to solve it by checking the thread but I am not getting a clear solution for my problem. Last, I am doing this by using the script as I have >1000 PDBs to process the same way so the command line would be preferred.

PS: I send you the molecule in PDB format as an example case.

Thanks in advance,


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