[Chimera-users] How to read a volume in python script

Huiya Zhou huiya at tamu.edu
Wed Aug 21 09:38:16 PDT 2019


I am trying to use UCSF Chimera to analysis cry-EM density maps. I would like to read a density map (for example: a .mrc file) in python script and get the array (or a three dimensional matrix) of all voxels of this density map. How could I realize this?

By the way, I tried to learn some basic chimera functions which can be used in python on this website:
https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/Examples/index.html <https://www.cgl.ucsf.edu/chimera/docs/ProgrammersGuide/Examples/index.html>
However, it seems this website can’t be opened and it shows me a blank page.

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