[Chimera-users] Making PDBs with over 10,000 atoms

[Ryan Harlich]

Hi Chimera,

I am trying to make a PDB with over 10,000 atoms. Currently we have this marked as a limitation to our project. I am researching to see if there is a way around this. Our current idea is to make the next 10,000 atoms another chain. Although when I apply this to a sample I get a break point between chain A and chain B. I do want them connected and to be different chains. So: 9,998.A 9,999.A 0.B 1.B connect.

In addition, I would need helices and sheets to span over these two chains. So helix or sheet would start at 9,998.A and end at 1.B.

Best,
Ryan Harlich

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