[Chimera-users] Using ChimeraX in no-gui mode

James Starlight jmsstarlight at gmail.com
Tue Apr 16 01:27:12 PDT 2019

Thank you so much Elaine!
I have some problems both with --nogui and --offscreen options with
the python error message. I will now copy it to the ChimeraX mailing

Just one question: assuming that in ChimeraX I color the structure
according to B-factors using
color byattribute bfactor palette rainbow range 2,100

what gradient colouring I should use in Chimera to obtain the "bar
plot" with the
rangecolor bfactor

Thank youin advance!

пн, 15 апр. 2019 г. в 23:31, Elaine Meng <meng at cgl.ucsf.edu>:
> Hi James,
> ChimeraX does not have the ability to make a color key yet. if you are using the “composite” approach you mentioned before,
> <http://plato.cgl.ucsf.edu/pipermail/chimera-users/2019-March/015590.html>
> ...you could make the color key image in Chimera and composite it with the molecule images from ChimeraX.
> Elaine
> > On Apr 15, 2019, at 9:51 AM, James Starlight <jmsstarlight at gmail.com> wrote:
> >
> > P.S. just forgot also to ask - how it would be possible to place bar
> > diagram to range b-factors colouring gradient in the manner of the
> > "key" option in the previous version of chimera?
> >
> > пн

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