[Chimera-users] calculate density from an AA model

[Elaine Meng]

Hi Tamas,
See command “molmap”
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/molmap.html>

Also, fitting atoms to a density map (Fit in Map GUI or “fitmap” command) has an option to simulate a map from the atoms and do map-map fitting.
<http://www.rbvi.ucsf.edu/chimera/docs/ContributedSoftware/fitmaps/fitmaps.html>
<http://www.rbvi.ucsf.edu/chimera/docs/UsersGuide/midas/fitmap.html>

I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Sep 6, 2018, at 2:48 AM, Tamas Hegedus <tamas at hegelab.org> wrote:
> 
> Hi,
> Is there an option (command, tool) in Chimera to calculate the theoretical electrondensity map for an all atom protein model?
> 
> Similar to the MDFF tool in VMD.
> https://www.ks.uiuc.edu/Training/Tutorials/science/mdff/tutorial_mdff-html/node4.html#SECTION00041000000000000000
> 
> Thanks,
> Tamas