[Chimera-users] ChimeraX and crosslinks visualization

[Tom Goddard]

Hi Pascal,

  I enhanced the ChimeraX select command so you can select the crosslinks in a length range.  Then you can color the selected ones.  For example,

	select #1.1 minimumLength 30
	color sel red

	select #1.1 minimumLength 5 maximumLength 10
	color sel yellow

	sel #1.1 min 10 max 15
	color sel blue

The minimumLength and maximumLength options will be in tonight’s ChimeraX builds (available around 5 AM Pacific time).

	Tom


> On Sep 1, 2018, at 2:57 AM, Pascal Albanese  wrote:
> 
> Dear Support Staff, 
> 
> first of all many thanks for developing Chimera!
> 
> I'm using ChimeraX to integrate CryoEM and crosslinking MS data.I think that some features might be further implemented (or maybe are already there but i don't know how to use them):
> 
> - Is it possible to load different sets of distances/crosslinks (like with different IDs)?
> - is it possible to color code the distances with a cutoff (like red if >30 for instance)?
> - The histogram and network is a nice feature, but it would be nice if there were some grouping based on the distances (i.e.: 1 to 5 A; 5 to 10 A, 10 to 15 A... etc), and then you can click on the column representing your distances class to select them (so you can make a subgroup, or delete them, or edit them etc...)
> 
> that's it, maybe something can be done writing the code but unfortunately it's not my job. 
> 
> Thanks a lot and looking forward to hear from you, 
> 
> Cheers, 
> Pascal 
> 
> -- 
> Pascal Albanese, PhD
> Post-doc, Politecnico di Torino
> Dipartimento DISAT,
> BioSolar Lab at Environment Park
> 
> Via Livorno 60
> 
> 10144 Torino
> 
> _______________________________________________
> Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> Manage subscription: http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20180904/2c5a2998/attachment.html>