[Chimera-users] Some UCSF Chimera marker (.cmm) bonds written as pseudobonds in pdb

Jun Ha Song junhasong at berkeley.edu
Tue Nov 20 08:40:32 PST 2018

Dear RBVI,

I have UCSF Chimera marker set made by Volume Traver, and I used "Write
PDB" in the model panel to transfer the .cmm file as .pdb file.

However, when I opened newly created .pdb file, only about 4.3% of bonds
were being shown as bonds, and the rest were being shown as pseudobonds. Is
there any reason for this phenomenon?

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