[Chimera-users] Volume viewer levels question

Elaine Meng meng at cgl.ucsf.edu
Tue May 15 11:06:02 PDT 2018


Hi Markus,
The behavior you describe is like entering some value that is higher than what is in your map, so there is no contour surface any more.   Then when you move the slider, it resets to the maximum value found.  Not sure why you expect higher levels, but maybe whatever program that wrote the file didn’t write bigger values, or didn’t write the format correctly.
I hope this helps,
Elaine
-----
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On May 15, 2018, at 10:15 AM, Markus Heller <mheller at cdrd.ca> wrote:
> 
> Hi all,
>  
> I have an issue displaying a map file that I opened using the insightgrid.py script.
>  
> When displaying the grid at the highest level I can get, the levels are still too low, but when I set the levels higher by typing something into the level field (e.g. 1.2e+03 instead of the 1e+03), the levels disappear altogether as shown in the second screenshot.  As soon as I adjust the slider, the levels reset to 1e+03.  What am I doing wrong?
>  
> Thanks
> Markus





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