[Chimera-users] Clustering algorithm

Elaine Meng meng at cgl.ucsf.edu
Tue Jul 10 14:12:37 PDT 2018

Hi David,
The clustering description in the MD Movie (trajectory viewer) page says to see Ensemble Cluster for details:

Here is the Ensemble Cluster documentation, including literature reference for the method:

I hope this helps,
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Jul 10, 2018, at 1:29 PM, David Adrian Saez San Martin <davidsaez at udec.cl> wrote:
> Hello, I want to use Chimera to generate clusters of a molecular dynamics trajectory. I have been looking for info about the clustering algorithm it uses, but I was not able to find anything. I guess it employs a default technique, does anybody know which one?
> Regards.
> David-.

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