[Chimera-users] Visualizing SwissDock clusters.dock4.pdb

[Elaine Meng]

Hi Francesco,
Is this a question?  We are not very familiar with the files SwissDock generates, so you’d have to at least give an example file.  It may be a nonstandard PDB file that requires some editing manually or with a script to split it into separate cluster files, but I have no idea really.  Maybe you already did that.  If you just made a separate file for each cluster, then you could turn individual models on and off in the Model Panel or select by model number, etc.
Best,
Elaine
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Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco


> On Dec 30, 2018, at 1:03 PM, Francesco Pietra <chiendarret at gmail.com> wrote:
> 
> Hi all
> I am trying to open sequentially with chimera the various clusters generated by SwissDock (file clusters.dock4.pdb in the output). I was only able to extract clusters from clusters.dock4.pdb and view them, one by one, with chimera.
> 
> Or a way to highlight the varius pdbs from loading clusters.dock4.pdb and target.pdb, in order to see where they are located. The web gui by SwissDock was much too grob.
> Thanks for advice
> francesco pietra