[Chimera-users] Visualizing SwissDock clusters.dock4.pdb

Elaine Meng meng at cgl.ucsf.edu
Mon Dec 31 09:53:54 PST 2018

Hi Francesco,
Is this a question?  We are not very familiar with the files SwissDock generates, so you’d have to at least give an example file.  It may be a nonstandard PDB file that requires some editing manually or with a script to split it into separate cluster files, but I have no idea really.  Maybe you already did that.  If you just made a separate file for each cluster, then you could turn individual models on and off in the Model Panel or select by model number, etc.
Elaine C. Meng, Ph.D.                       
UCSF Chimera(X) team
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Dec 30, 2018, at 1:03 PM, Francesco Pietra <chiendarret at gmail.com> wrote:
> Hi all
> I am trying to open sequentially with chimera the various clusters generated by SwissDock (file clusters.dock4.pdb in the output). I was only able to extract clusters from clusters.dock4.pdb and view them, one by one, with chimera.
> Or a way to highlight the varius pdbs from loading clusters.dock4.pdb and target.pdb, in order to see where they are located. The web gui by SwissDock was much too grob.
> Thanks for advice
> francesco pietra 

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