[Chimera-users] Query (how to find H-bonds)

Gurudeeban Selvaraj gurudeeb99 at qq.com
Sat Sep 30 04:57:50 PDT 2017

Dear Dr.Elaine,

          Thanks for the information. It is working now but some of them I could not see hydrogen bonds (Intra). Now I could not see the ligand structure of the docked result in Chimera. 

I have enclosed file and snap shot of my issue. Let me know, what will do?

 Dr. Gurudeeban Selvaraj, Ph.D.
Postdoctoral Researcher
Center for Food Science and Technology
School of Chemical Engineering and Environment 
 Henan University of Technology, Zhengzhou, China
 Mobile: +86 1883 800 2927; +91 84890 55578  

 Residence: Room No. 503, Foreign Teacher's Apartment, University Garden, Lianhua Street No. 50, Hi-Tech development Zone, Zhengzhou, 450001, China


------------------ Original ------------------
From:  "Elaine Meng";<meng at cgl.ucsf.edu>;
Send time: Friday, Sep 29, 2017 5:06 AM
To: "Gurudeeban Selvaraj"<gurudeeb99 at qq.com>; 
Cc: "UCSF Chimera Mailing List"<chimera-users at cgl.ucsf.edu>; 
Subject:  Re: [Chimera-users] Query (how to find H-bonds)

> On Sep 28, 2017, at 1:54 PM, Elaine Meng <meng at cgl.ucsf.edu> wrote:
> Many orange lines are drawn on the structure to show the H-bonds. 

One minor correction:  for you, the lines will be whatever color is shown in the square color well near the top of the H-bond dialog… the default is a bright blue color similar to cyan.

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