[Chimera-users] Help in docking with Chimera

Md Zahir Uddin m_uddin at u.pacific.edu
Fri May 19 11:46:07 PDT 2017


My name is Zahir. I am a Ph.D. student of Pharmaceutics at University of
the Pacific. Recently in our lab we were trying to do some docking of our
peptide ligands on the human Aminopeptidase N (CD13) receptor using the
Autodock vina option in the Chimera. But everytime we are getting an error
message and the docking stops. I am attaching the error message here. We
did dockprep of the receptor and ligands. And we tried to do the docking
with both pdb and mol2 files.

We would really appreciate your help in this regard.

Md Zahir Uddin

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20170519/12d496fc/attachment.html>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: Capture 1.JPG
Type: image/jpeg
Size: 157363 bytes
Desc: not available
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20170519/12d496fc/attachment.jpe>

More information about the Chimera-users mailing list