[Chimera-users] How to place a small volumed object in place of markers in marker set?

Tom Goddard goddard at sonic.net
Wed Nov 23 12:52:46 PST 2016

What kind of object are you trying to place, a molecular structure?  a density map?  an abstract shape like an ellipsoid?  There is not a general facility to do this but it may be possible to write a script to do it in specific cases.  The following Python script, placem.py,

	http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/placem.py <http://plato.cgl.ucsf.edu/trac/chimera/attachment/wiki/Scripts/placem.py>

on the Chimera Python scripts web page 

	http://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts <http://plato.cgl.ucsf.edu/trac/chimera/wiki/Scripts>

can place molecules or maps at positions listed in a text file.



> On Nov 22, 2016, at 12:56 PM, BRANDEN WAYMON WEST <bwest121 at berkeley.edu> wrote:
> How do I place an object with small volume in the locations of markers in a marker set? Essentially, I would like to replace the sphere markers with copies of my own object. 
> This is my first post in this mailing list. I very much appreciate all of your help. 
> Thank you.
> Branden West
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