[Chimera-users] using fitmap with per-frame analysis.

Bala subramanian bala.biophysics at gmail.com
Mon Mar 21 09:45:14 PDT 2016

I have a task which is as follows; I have done the simulation of a protein,
whose EM map is already available.

I want to fit the MD snapshots on to the map and to filter out some best
frames based on the overlap statistics. I am aware that chimera does only
rigid body fitting.

I would like to know, for instance, if I can open the EM-map and the MD
traj in Chimera and use per-frame analysis to achieve my goal. Also, i need
some way to output/write the fitting statistics (eg. overlap value) to a
file so that i can later filter out the best frames based on the statistics.

Thank you,

C. Balasubramanian
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