[Chimera-users] reset positions

Eric Pettersen pett at cgl.ucsf.edu
Fri Mar 18 13:29:44 PDT 2016

This is kind of hokey, but you could insert a perframe command that both slows down the frame rate and reports the frame number to the reply log, then watch the reply log as the command executes to see which frame number is where the “crash” occurs.  Something like:

reset p1; perframe “echo $1; sleep 0.5” frames 100; reset p3 100


	Eric Pettersen
	UCSF Computer Graphics Lab

> On Mar 18, 2016, at 10:18 AM, Dougherty, Matthew T <matthewd at bcm.edu> wrote:
> I have two positions set, p1 & p3.
> When I do  "reset p1; reset p3 100" I have a trajectory problem with the camera crashing through a structure in between p1 & p3.
> I would like to create a new position p2 to avoid the crash, going from p1 to p2 to p3. 
> I can get close to the crash by a freeze command. 
> How can I determine the frame number being executed by the reset command when I freeze?
> Matthew Dougherty
> National Center for Macromolecular Imaging
> Baylor College of Medicine
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