[Chimera-users] MatchMaker

Elaine Meng meng at cgl.ucsf.edu
Tue Mar 1 09:02:55 PST 2016

Fiitting uses one point per residue: CA atoms in amino acids and C4' atoms in nucleic acids.

You can click the Help button on the dialog to see this and other information about the tool.
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco

> On Mar 1, 2016, at 8:00 AM, sdimicco <sdimicco at unisa.it> wrote:
> Dear Developer,
> I am using MatchMaker to compare some peptides.  I would like to know if the RMSD value is referenced to the backbone atoms or to whole atom structure.
> Thank you in advamce.
> All the best.

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