[Chimera-users] MatchMaker

[Elaine Meng]

Hello,
Fiitting uses one point per residue: CA atoms in amino acids and C4' atoms in nucleic acids.

You can click the Help button on the dialog to see this and other information about the tool.
Best,
Elaine
----------
Elaine C. Meng, Ph.D. 
UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
Department of Pharmaceutical Chemistry
University of California, San Francisco



> On Mar 1, 2016, at 8:00 AM, sdimicco <sdimicco at unisa.it> wrote:
> 
> Dear Developer,
> 
>  
> I am using MatchMaker to compare some peptides.  I would like to know if the RMSD value is referenced to the backbone atoms or to whole atom structure.
> 
>  
> Thank you in advamce.
> 
>  
> All the best.