[Chimera-users] Chimera - Saving multiple files

[Elza Sofia Fonseca]

Hi Elaine,

I didn't understand the first time, but now it finally worked!!!
Thank you very much!

Best regards,

2016-06-19 17:13 GMT+01:00 Elaine Meng <meng at cgl.ucsf.edu>:

> Hi Elza,
>
> As I tried to describe before, you would NOT enter docking1.1.pdb.  You
> would enter:  docking$number.pdb
>
> and choose (highlight with mouse) only those two models in the Models part
> of the dialog. That would give you two output files with names
> automatically including the numbers.
>
> Elaine
>
>
> On Jun 17, 2016, at 12:45 PM, Elza Sofia Fonseca <fonseca.ess at gmail.com>
> wrote:
>
> > Hi Elaine,
> >
> > Thank you for your help, but it didn't work...
> > I want the protein - target.pdb (#0) - and the model (#1.1), so I
> selected these ones and in the name I wrote docking1.1.pdb and the error
> meaage appeared again...
> >
> >
> > Best regards,
> >
> >
> > 2016-06-16 18:02 GMT+01:00 Elaine Meng <meng at cgl.ucsf.edu>:
> > Hi Elza,
> > This is not a bug, just a question (so it should go to the chimera-users
> email address only, not chimera-bugs).
> >
> > Literally, you must enter a name that includes either “$name” or
> “$number” into the output-filename area.  Then that part will be replaced
> by the model name or model number of the individual docking, to create
> multiple different output filenames.  You can’t just enter a name without
> one of those because multiple names are required for multiple output files,
> not a single name.
> >
> > You can see the model names and model numbers of the docking results in
> the “Save models” area of the PDB-saving dialog (Chimera menu: File… Save
> PDB).
> >
> > For example, if you enter File name in the PDB-saving dialog as:
> >
> > docking$number.pdb
> >
> > It will write model #1.1 to a file named docking1.1.pdb, model #1.2 to a
> file named docking1.2.pdb, etc.
> >
> > I hope this helps,
> > Elaine
> > ----------
> > Elaine C. Meng, Ph.D.
> > UCSF Computer Graphics Lab (Chimera team) and Babbitt Lab
> > Department of Pharmaceutical Chemistry
> > University of California, San Francisco
> >
> > > On Jun 16, 2016, at 3:48 AM, Elza Sofia Fonseca <fonseca.ess at gmail.com>
> wrote:
> > >
> > > Dear all,
> > >
> > > I am Elza Fonseca, a PhD student of the University of Porto and I am
> now learning to do dockings.
> > >
> > > I am using Chimera for open the results from SwissDock and I would
> like to save it like a multiple file. However I always get the same error
> message:
> > > "You must provide a file name that contains either $name or $number,
> which will be changed to the model name or model number (respectively) in
> the final saved file name". I don't understand what "$name or $number"
> means...
> > > May you please help me solving it? I apologize for my ignorance.
> > >
> >
> >
> >
> >
> > --
> > Elza Fonseca
> >
> > 00351 966 199 802
> >
> > PhD  student
> > CIIMAR – AGE/EDEC
> >
> > http://www.ciimar.up.pt/researchgroup.php?id=AGE
> > _______________________________________________
> > Chimera-users mailing list: Chimera-users at cgl.ucsf.edu
> > Manage subscription:
> http://plato.cgl.ucsf.edu/mailman/listinfo/chimera-users
>
>


-- 

*Elza Fonseca*

00351 966 199 802



PhD  student
*CIIMAR – AGE/EDEC*


http://www.ciimar.up.pt/researchgroup.php?id=AGE
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20160620/22f1cd8c/attachment.html>