[Chimera-users] Analysis of the contact maps from the MARTINI MD trajectory

Elaine Meng meng at cgl.ucsf.edu
Wed Jun 1 08:39:19 PDT 2016

On May 31, 2016, at 4:44 PM, Eric Pettersen <pett at cgl.ucsf.edu> wrote:

>> On May 30, 2016, at 8:54 AM, James Starlight <jmsstarlight at gmail.com> wrote:
>> As I found it's possbile to narrow frame range to 2 frames, defining
>> first and last frames for calculations of the contacts from the MD
>> movie plugin. Does it meas that it will compare contacts from those 2
>> given snapshots and not for only 1 selected snapshot?
> Yes, in that case it will use both snapshots.  However, what you can do is put in a “stride” value large enough that the start value plus the stride is immediately larger than the last frame.  In that case, only the starting frame will be used.
Just to clarify,

stride = step size


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