[Chimera-users] using scipy with Chimera

Tom Goddard goddard at sonic.net
Wed Jul 13 11:15:46 PDT 2016


  Ok I’ve updated the Chimera daily build to use numpy 1.11.1.  Will be available around 6 AM Pacific time tomorrow from the Chimera download page if he builds succeed.  I did not update the Chimera 1.11 release candidate because we expect to make that an official release in a week and that is too little time to be sure the new numpy works.


> On Jul 12, 2016, at 3:17 PM, Xiao-Bo Li wrote:
> Hi,
> I need to use scipy with Chimera.  I like to copy over the scipy folder from my ubuntu's "/usr/lib/python2.7/dist-packages/scipy" directory.  This is what I have done in the past, and it works fine.
> However, when i installed the .bin file for Chimera from Chimera's website (I tried versions 1.11 and 1.8.1), I find that the numpy versions there are 1.7.0b2.  The numpy version on my ubuntu computer is 1.11.0.
> Since my ubuntu python's numpy, and Chimera's numpy are different versions, I can no longer using the scipy folder for Chimera.  Can you please update Chimera's numpy version to 1.11.0?
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