[Chimera-users] morph map tool EM density

Franken, L.E. l.e.franken at rug.nl
Wed Apr 13 07:16:48 PDT 2016

Hi all,
I am fairly new to using chimera and was wondering if there is a way to get
more control over the path that is calculated when morph map is used for
two EM density maps that are different conformations. When I use the tool
now it will change the visible density a great deal and rather than
rotating only a certain part of the map the result seems quite confusing to
look at as the whole structures move. Is there a way to fix some areas
while alowing to morph subregeons? Or does anyone have a better idea on how
to approach this? the map is a dimer and the change is suposed to be a
difference in rotation between the two monomers. Ideally I would show this
by fixing two monomers ontop of each other and allowing the other halfs to

Thank you in advance,
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