[Chimera-users] Sequential stereo problems in Chimera in Mac after updating to OSX EL Capitan

Engelhardt, Peter peter.engelhardt at helsinki.fi
Mon Nov 30 12:54:19 PST 2015


No sequential stereo is working in Chimera after updating of our Macs to 
OS X El Capitan -  10.11.1 in the CRTs linked to MacPros

Error remarks:
- unable to turn on stereo viewing - "Unable to find hardware stereo support  ... "

(see attachment).

This problem has not appeared in with earlier OSX updates!

We hope this problem will be fixed soon.


Peter Engelhardt, PhD, docent
Adjunct Professor in Molecular Genetics
Unit of Molecular Electron Tomography

Nanomicroscopy Center (NMC),
Department of Applied Physics
Aalto University, School of Science and Technology,
Puumiehenkuja 2, FI02150 Espoo

Department of Pathology
Haartman Institute
P.O.Box 21 (Haartmaninkatu 3)
FIN-00014 University of Helsinki,

Email: Peter.Engelhardt at Helsinki.Fi
Email: Peter.Engelhardt at Aalto.Fi
URL: http://www.lce.hut.fi/~engelhar/
Mobil: +358-400193342

Home address:
Lindstedstvägen 1 B 7
FIN-02700 Grankulla,
Home Tel: +358-505113192

From: chimera-users-bounces at cgl.ucsf.edu <chimera-users-bounces at cgl.ucsf.edu> on behalf of chimera-users-request at cgl.ucsf.edu <chimera-users-request at cgl.ucsf.edu>
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Subject: Chimera-users Digest, Vol 151, Issue 35

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Today's Topics:

   1. inserting missing residue (Francesco Pietra)


Message: 1
Date: Mon, 30 Nov 2015 19:40:50 +0100
From: Francesco Pietra <chiendarret at gmail.com>
To: chimera <chimera-users at cgl.ucsf.edu>
Subject: [Chimera-users] inserting missing residue
        <CAEv0nmtYfsQJBkbzkypX+uzqbYU7EMLhFZrybVhzj5W1hdM_OQ at mail.gmail.com>
Content-Type: text/plain; charset="utf-8"

II would like to insert a single non-terminal missing amino acid in a big
peptide. By using MODELLER with CHIMERA, I don't find any option for NOT
modeling loops. Just inserting the missing residue without moving the
adjacent residues.

In the sequence that appears by invoking modeling, the missing residue is
not marked in any way, the sequence just continues as if no non-terminal
residue were missing.


francesco pietra
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