[Chimera-users] Average structure

George Tzotzos gtzotzos at me.com
Tue Jul 28 08:22:01 PDT 2015

Hi everybody,

I’m analysing the Principal Components of an Amber trajectory. I have generated a number of representative pdb files which are concatenated for each PC.

Question: Is there a way to generate an average structure in Chimera from the concatenated PDB files? 

I know this can be done using MD movie but this solution requires that I generate a new topology file for my complex (the original topology file contains ligands and water molecules). 

Thank you in advance for any suggestions



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