[Chimera-users] Problem using structureViz plugin for Cytoscape - Chimera

Scooter Morris scooter at cgl.ucsf.edu
Wed Feb 11 10:17:26 PST 2015

Hi Juan,
     I've uploaded a new version of structureViz (1.0.1) that should fix 
your problem.  Don't hesitate to let us know if there are other 
issues/enhancements you would like to see.

-- scooter

On Feb 9, 2015, at 6:39 AM, Juan Eiros Zamora 
<j.eiros-zamora14 at imperial.ac.uk 
<mailto:j.eiros-zamora14 at imperial.ac.uk>> wrote:

> Hi all,
> I am using Chimera 1.10.1 and Cytoscape 3.2.0, and have installed the 
> structureViz2 plugin.
> I use structureviz  to open chimera through cytoscape and load an MD 
> trajectory of a protein to create a RIN through Analysis --> Residue 
> interaction network...
> What I am trying to do is colour the nodes in cytoscape based on which 
> chain they belong to. My protein has three chains, and in chimera I 
> color each differently. In cytoscape, I go to apps --> structureviz--> 
> synchronize residue colors. Here I am given two options. The first one 
> is “Apply colors from current network view to associated Chimera 
> models”: This one works fine, but it is not what I want. What I want 
> to do is the second option: “Apply colors from associated Chimera 
> models to current network view”, but when I clik on OK it does nothing.
> Anybody having the same problem or some suggestions on how I might 
> solve this?
> Much appreciated,
> Juan Eiros

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