[Chimera-users] Problem using structureViz plugin for Cytoscape - Chimera
scooter at cgl.ucsf.edu
Wed Feb 11 10:17:26 PST 2015
I've uploaded a new version of structureViz (1.0.1) that should fix
your problem. Don't hesitate to let us know if there are other
issues/enhancements you would like to see.
On Feb 9, 2015, at 6:39 AM, Juan Eiros Zamora
<j.eiros-zamora14 at imperial.ac.uk
<mailto:j.eiros-zamora14 at imperial.ac.uk>> wrote:
> Hi all,
> I am using Chimera 1.10.1 and Cytoscape 3.2.0, and have installed the
> structureViz2 plugin.
> I use structureviz to open chimera through cytoscape and load an MD
> trajectory of a protein to create a RIN through Analysis --> Residue
> interaction network...
> What I am trying to do is colour the nodes in cytoscape based on which
> chain they belong to. My protein has three chains, and in chimera I
> color each differently. In cytoscape, I go to apps --> structureviz-->
> synchronize residue colors. Here I am given two options. The first one
> is “Apply colors from current network view to associated Chimera
> models”: This one works fine, but it is not what I want. What I want
> to do is the second option: “Apply colors from associated Chimera
> models to current network view”, but when I clik on OK it does nothing.
> Anybody having the same problem or some suggestions on how I might
> solve this?
> Much appreciated,
> Juan Eiros
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