[Chimera-users] open amber trajectory error

Renato Freitas renatoffs at gmail.com
Fri Sep 19 07:37:07 PDT 2014


I am trying to open a zipped amber trajectory with chimera but I am getting
the following error:

#################################
Traceback (most recent call last):
  File
"/home/disk0/rfreitas/softwares/chimera/share/chimera/triggerSet.py", line
83, in invoke
    self._funcData, triggerData)
  File "/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py",
line 329, in portOnTop
    self.remove_webinfo(self.listen_port)
  File "/home/disk0/rfreitas/softwares/chimera/share/DBPuppet/__init__.py",
line 369, in remove_webinfo
    with lock:
  File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 120, in __enter__
    self.acquire()
  File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 32, in acquire
    self._createFile()
  File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 86, in _createFile
    os.write(self.fd, "%d\n" % os.getpid())
OSError: [Errno 28] No space left on device
Error processing trigger "Focus In":
OSError: [Errno 28] No space left on device

  File
"/home/disk0/rfreitas/softwares/chimera/lib/python2.7/site-packages/filelock.py",
line 86, in _createFile
    os.write(self.fd, "%d\n" % os.getpid())

See reply log for Python traceback.
################################################

if I unzip the file, I can open it without problems. Since I have many
files to look and they are very big (> 300 MB zipped) I don't want to unzip
every file whenever I have to look at the trajectory.
Any help will be appreciated.

thanks,

Renato
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