[Chimera-users] Display atoms after multiscale model

vamsee vamseedharr at gmail.com
Wed Oct 29 14:15:00 PDT 2014


I am working on a virus capsid and trying to figure out the buried surface
area between subunits (similar to what ViperDB has. I have to do this for a
few capsids and I am trying to automate this to the maximum possible
extent. I have been able to follow the steps in this link Buried surface
area calculation
<http://www.cgl.ucsf.edu/pipermail/chimera-users/2006-December/001131.html> and
manually calculate the information. Are there commands available to do the
Also, what is the difference between the surfaces created using a
multiscale model and surfaces computed from the atom-spec? Would this
difference in the surface affect the calculation of the buried surface
area? And if it does affect it which one be a more accurate representation?

Thank you

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