[Chimera-users] Detection of Internal water along MD trajectory

James Starlight jmsstarlight at gmail.com
Mon Mar 17 03:21:19 PDT 2014

Dear Chimera users!

I've performed md simulation of water soluble protein having
water-assessable channel in its interior. I'd like to perform analysis
of average number of water molecules detected within the protein
interior during MD trajectory with the possible visualization of such
internal water binding sites. Does SASA calculation which I've seen in
vmd could provide me with additional insights? I'd be thankful if you
provide me with some Chimera tools suitable for such task.

Many thanks for help,

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://plato.cgl.ucsf.edu/pipermail/chimera-users/attachments/20140317/251612d6/attachment.html>

More information about the Chimera-users mailing list