[Chimera-users] batch writing of attributes

[Eric Pettersen]

On Jan 11, 2014, at 1:58 PM, Jay Eifler <jqewt2 at mail.umkc.edu> wrote:

> 
> I'm trying to automate saving the areaSAS for a bunch
> of models. I've got no problem loading the models, etc.
> The problem is simply how do I use command line
> arguments to save the areaSAS. I've tried writesel.  This
> works all fine in Render/Select by attribute simply
> because it has a feature to save the areaSAS to a file.
> Thanks.

Hi Jay,
	Do you really need the values on a per-atom basis?  If you just need the grand total, it's reported in the reply log so you could just open and surface your structures one by one via a script (one by one to avoid possibly running out of memory) and then afterward save the reply log contents to a file manually (there's a "Save" button on the reply log).

--Eric

                        Eric Pettersen
                        UCSF Computer Graphics Lab
                        http://www.cgl.ucsf.edu


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